Scaffold Ga0222716_10037489

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10037489
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3500
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017045	Metagenome / Metatranscriptome	243	Y
F072753	Metagenome	121	N
F081764	Metagenome	114	N
F092717	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100374892	F017045	AGGA	MGQIRMAKSNSLLRRYAKLNQLHSEIMQKPKNNVGQCVHSLQAFKKYIKTFRQIVLVENGDATFKHTQL
Ga0222716_100374894	F072753	AGGA	MNSNGHIYLSKIKYDCLDFISNFIKQNKYSPTYKEIGEHFQFSRARAGAICAELFKLGLISKGKAAHRKIRMTEKQTTQIPTLNFNKEYSTMDLRRXVNK
Ga0222716_100374896	F092717	N/A	MADFNNTISLWKRKPRENDVAGKAYPHYTGKVNVDGVVKELSVWIQTEKKNPNSADMSGNVQEPYKKPENKSEEIPY
Ga0222716_100374899	F081764	AGAAG	MEKRIRKVADCYTKFGLQHTSKSTACLKHSDRFFKKILLPKETRNLNNASFQGGTLVHDVVQEVVTKKLNLDEVINSDKIQKDIDSYLSFNDKDKYKFKFIVKNLKLTAQNHLDNIAELETQNFEKELEYTAWLPKVETYWLMYLDLVGTKNFGDLKNCFGSAKLSPLKNPVKAAKKKTDKPVIDNRIDDWVYSNVKVPTRPYFSDVMQISLYKNSCPLPPFLSYASNCDRKLFTENNCDELKQENLDQAIKILQVYEIAWQKKLEIADGDIEKLAWLCVPDVSDIKKNTFMWENVPNEYKQKFLDVYGL