Scaffold Ga0222716_10035884

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10035884
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040673	Metagenome / Metatranscriptome	161	Y
F077329	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100358842	F077329	AGGAG	MIDRTMWFLYNRLGSEDRQAPSINNISGMFFNYWKIMNTLGINTQSLSAIDIYNGLSNCYDKSAKSTAKNLYEYGEVPANADYRVSYYEQDHEIYDTYANCVNLNEVLVEGSDPEFDDTDPFREALNEVAYENIEYEIESETFTLNEDSIEWYKTVHPSDDKLITYMYDTGENFEWDDIEEFLGDKLNDIDDANADMHISQFRKFMLDRLANQNINIIDGLEQTKDGMKEVNPETGELQD
Ga0222716_100358845	F040673	AGGAG	MSKNKTMDDMWVCDYCGSEDVEEQVWRNMNTLEISDINDYFQCNNCEEETSPMTYFDWTEKIAEECGGNKDKYDEITAGSRM