NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10034112

Scaffold Ga0222716_10034112


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10034112 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3687
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010473Metagenome / Metatranscriptome303Y
F013081Metagenome / Metatranscriptome274N
F019630Metagenome / Metatranscriptome228N
F030048Metagenome / Metatranscriptome186N
F043091Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_1003411210F010473N/AMNLIRYEVRAGFFKGFLFGVRHYPFDDEDMYEEDIVLYIGIFQIILTLIYEK
Ga0222716_1003411211F019630AGGAGMPKIKKKIVLKNCNYKHQQYCFKKGFIIYPVVSGKMFKVYCNRVKGNYYMKGKEFNKQESFQAIWDLYTKIYNYEFNKVRG
Ga0222716_1003411212F030048AGAAGMLQGELCKNQEKIAYKSCVSSYFTNGDRQDIMEYWLQLFDQKRFCEAKGVEKALELIDIYEELNAKD
Ga0222716_100341122F043091N/AMELTEKKLEKISGAILSSFINLHLLEDAEKIGLFRQRVRNNIRRTISDLKEIEINYYNKIEEVDEKELGDKLTANKLIFLDWVLNKFDFNDFCKIQEVCLAYEADKERVTEVTDEVLINNGAK
Ga0222716_100341123F013081AGGAMDLIKILKTIEPEYKNTNQCINPLPNEVELTLDNEDYLIEVSLKEGVLETNFWQGEEKYNASDDDINYIYNYLEQLLTDKIEETKQYYNQHNYNYQVWN
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