Scaffold Ga0222716_10031508

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10031508
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3860
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016757	Metagenome / Metatranscriptome	245	Y
F028792	Metagenome / Metatranscriptome	190	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100315082	F029934	GGAG	MATVTRTCLACNGGGIVEYDKPVIDHANGGWIDSSYGRCDVCDGEGDLHVLSEFTSLDILAFLNESAKILENADIVDSTLDDIYGHVKDAKDKMREYIKFHGYDGDDR
Ga0222716_100315083	F028792	AGGAG	MSNRGDYKVRVRMTTEREVIVNADGFDDAEFKAIKEATALVDGYDAEVLWAIEHGSLSDWEKKDGNSN
Ga0222716_100315084	F016757	GGAG	VTERTWEVKVEATTTREVIVHANTEYEAQIKAQIDMVGLVGGENTKVLRIEEITDE