NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10030204

Scaffold Ga0222716_10030204


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10030204 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3954
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006786Metagenome364N
F016968Metagenome / Metatranscriptome243Y
F026259Metagenome198N
F095402Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100302041F006786N/AGTKQFQALMAFLFQMRSLGIYANRPVRGGSSLSVHATGRACDLGGSQDKVKAAIDFLYAFRDELGIEEIHDYRNVWIPGEYGAAYRCSRDNGGLLAGWRVYDKPTIGAGGNWVHYEISPDMADDPDAVTAAFTDILNRIVAALEGNK
Ga0222716_100302042F016968AGGAMNITNPPKALIALVGLICLTVLLAVNAIPTEAGTGMIGSILGYAIGNGIAARSGTAVDPIIGKKPKA
Ga0222716_100302046F026259GAGGVIIELSDKDMALASMAGMMLQRNVEARGAYTDGNRSREVQIAHKKLGAQAEIAVCNYLGAIWSGMPMPSDHNRDSYDVEDWIEVRMAANRGGLRFWNRDLPRFEDNYKGKKYHDDTPFVLCHPGQMLHHVKIVGWIWAAYALELWEYERYYDTDSYVVPIKELYSPASLKETFNDYKENR
Ga0222716_100302049F095402GGAGGVKTPRIDLVEWYDSFGIEDEWHEVNCKHDHKVIVSVGYLVGETLDYLYLATTVDEESETYACAIAIFKPCIKTRSTLAEAGYR
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