NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10029574

Scaffold Ga0222716_10029574


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10029574 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4002
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N
F018943Metagenome / Metatranscriptome232Y
F074760Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100295742F018943GAGGMKIIIAGSTSTMGKAVYEHYSKIYECLGVSKTTGYDFNSQEDQDRIVSEALARDIFLNIAHVGTTQSTLLLKLKQRWSPEAPLKKVVTIGSLATKVPKKLLDQVGIDKQYLRDKHHIDAVSSVLANETPFGQQLQFSLVRVLNYGEKTGERSGEPTCSAEDIIRTIDYLIEEPMYVSTLDVRRF
Ga0222716_100295745F017147N/AMDKWNNFYKFKGGLAVTNMLYEPLVSDNKKIFCMNWNANKYFDNMEMTDELYNYWFNQEVKYLFKLKNKKYIPEIINIDFSKRTITFRWYDKSLHWLLETRQIDTIPNWQDKIKAIKDDLEKNNIYKINMYPHTFYFDDEDNAHIMDLYGCTDIDKKYLDVQFLKPLIRNDRFDKFITNNKLDTHELYKETIKTNYAEWPGDFLNA
Ga0222716_100295746F074760N/AMLEKLDTKTDSKKLYQLLKHLPEGKNVLNKPTGDFFYDPWEVLPEYKDTVLDELLQQLPDHGEARLIVMKPGESYSAHADIDDRYHVTLDAEHSYLHDIENEVMFPTQADDSVYLMNTGLLHSASNYGYKNRYQLVIRKRLKNNTEIYDPRQVLMTVKNPVYNMRYLFDSSFSRMLNRFVKEGKVNNFARINETTVKYLCENESITEILRMQQICGFDIDIVYG
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