Scaffold Ga0222716_10029355

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10029355
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4019
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002907	Metagenome / Metatranscriptome	521	Y
F030378	Metagenome / Metatranscriptome	185	Y
F046343	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100293551	F002907	GGAGG	VKQNPYWFFEKWGINEPTPLEVLEQKVQDLEDKVRVLEECNVEQTNALYECWNSLDARIDILAEYKTDV
Ga0222716_100293554	F030378	AGGA	MTNEYLSSDFSYKKYSLEHLENWLHDALNCEDLTPQDIYDTIVKCVDENVEYHKKYLTKNIEVLSLLKGHRPGVFDASAHEFDDFWYDSETPEYTEEVLDAMCDAAVDKEKCREYNMREAEYYNKRAELDAKYNDPYAKLVKEAGGYEWTPGMKSAGYNV
Ga0222716_100293556	F046343	N/A	MTLPKTNAAALTKEEWDELVALKEAITYAPQTVSAQKMEKFAELMVRSLEGKESNCPQ