Scaffold Ga0222716_10023053

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10023053
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4605
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010695	Metagenome / Metatranscriptome	300	Y
F011311	Metagenome / Metatranscriptome	292	Y
F011679	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100230536	F011311	N/A	MYRLNKKVGVFMFVIVNKKNGSIHREPSKRSYAGTEYKSAGAAKAGITRTIKFYNKAIADVKAVVKSGKSEFYSPYYNHFRDATDKALGRTHRADVNNYKVVPLAEYKEPMITRTGTCPGTGEKITVTEGINQPHYLSPLSESYWSM
Ga0222716_100230537	F010695	N/A	MYSLNKVVGDFMQNVNTTNQNPDKIVSIPGYHIGSLTCYNANNDDSANIQLTALEEMWYSHEENVDHPEGSEYPVSINVPHMKIMRDRVIDSVFNRTGINVRDFDSIIHATSSPGRDQQGNIIDHGNENMMRNV
Ga0222716_100230538	F011679	GAGG	MIKDRNTTVLASDIQTTEQMKKFLVHCTGAKLTPVANNNNAFWVSGDNRGNFYENKYYKVVFGYVTEEFRAGKPTKSGYGFDIQATGDYNAWSLMGEFRTMIKEAMAEHKQTQSA