Scaffold Ga0222716_10018469

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10018469
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5192
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011391	Metagenome / Metatranscriptome	291	Y
F018366	Metagenome	235	N
F028739	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1001846910	F018366	N/A	VEALTVKPQEVILVTRARVDVPSWWKVVPYWDDRIWPCVNVGVREASAEWCTHLPVDDTMDPNFFDGLVLQGDAVNVRGRWNGGLCYGTPDQYHNLLNMGNNGMPGLAVIRRKTWLKIPYRSHKYVDWVHWCEMRSHNVEASFDSRCVWTWVRHDDALTAQPDRQAEQDVVEFCQLLKSGRVIPGEDWPPKLAE
Ga0222716_100184696	F011391	N/A	MAKYQVVQGFTVLDKQYPATIDGNEVDHLDSLLASGRIVLVAEKSTSIADKAGDK
Ga0222716_100184699	F028739	N/A	MILPDLKDRHKGEQIWVCGSGPSMGWVTPQFFEGKTVVAINEVGYVFGLADFYVATNYSTHHPVVAKNVADYPHIIVVCPDMNLEASDITATHVGVGNNVTFRPHKPFWNPEAGWPTDPDVLVCGGTSAHIAMHLACYMGASQINLVGVDLGLIDGQENFAGYRKSNGAMDGWRQQFGVVVGKLRELYGVRFFRLQPSHELLIVE