Scaffold Ga0222716_10018179

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10018179
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5234
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007167	Metagenome / Metatranscriptome	356	N
F032641	Metagenome / Metatranscriptome	179	N
F038654	Metagenome / Metatranscriptome	165	N
F042805	Metagenome / Metatranscriptome	157	N
F046347	Metagenome / Metatranscriptome	151	N
F055693	Metagenome / Metatranscriptome	138	N
F100545	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100181791	F055693	N/A	LNRKINQVTQLNRAENQLVNVRPRNNEVREAINEVRFAKSVVPVRENKLQTVLGNAEEVVVKANENMLTERKNAGPVNVPNVAPPAPKTKINARPNLANVRNNGVRVGNTNNVTGTRNVTGGAVPIASPVGPVRPIGEKTVNGDKEAKNFDRTLGEALAKIVK
Ga0222716_1001817910	F007167	N/A	MEVKDAIFGFYLSPSSAVYIPKEGVETKKMKDGAIIKVPKYMYHPLTIEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPENLREALSIIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKSKVERDRKKAELFNIINNLLEDKDKIPYVSRMLM
Ga0222716_100181792	F038654	N/A	MTLIIAILLLLLIIYYDRTRSLYIIQGAPIRVPDAPFAVTNPPNFANVKEPIGELTSMMLKNNVQVE
Ga0222716_100181793	F100545	GAG	MESTDRSFTVIDIRRPGAKKTRSTVGEGGRFVSKTPFGAARKAFTRACREKKVKGTCKLVVTVQETTRGENGKVFAYKMKREKLDEPREISRGGGFFGGATPITIEYSISGVATDVPKDI
Ga0222716_100181796	F032641	N/A	MNAVPNNHSCMAGLANLGVATAFGALMVSMEQTCGAFIVEGQRQRLDVMKALRAGGEVPELEIDDNQMGLLQAGRAFALVCLFGIFFMVTTSPLVSKKRIFPMKSFTYLLAGLAFLAFSLQIYLMRSIKKGITSSERTMRFSLAVIYMIFLVMSLFVMLNY
Ga0222716_100181798	F046347	GAGG	MILYEWQTKMSELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDVDKFKGLEGVGRSTLELFKEFVTTGEMKRLKDLKGED
Ga0222716_100181799	F042805	N/A	MKVTFPGWLGWVEEMPEDEDEEEKVSIIEKCFMEITDVYAEKLLWPSIYMDEENGYDSEDNLERIWYYSDARSYLEEYLEENGYSRDYYHIMHVDATFHEPGKEPREVKFYVKEITCEIEHPGGNCSDEMFKWWVCEELYGDFDEYGLDVPVENYRIFLYCLNQAWQNVKALPECITKLIDKKRSTIKDDSLRVADENERTG