NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10013525

Scaffold Ga0222716_10013525


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10013525 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6145
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027055Metagenome196Y
F063648Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_1001352512F063648GAGMAGKAVTLEGIILRQNRPMQKATIGYSVRGKTMATTAANKNRAIRQEALREQLSNQGHVQHVTDIAKKLTDLDNELDSTQVQRLKSAADIKLKLIGKYLGDVKAIELSGDGGGDLVIKVADFKNS
Ga0222716_100135259F027055GAGGMNTYQKIILAAALTFAFIWLSNDEFNHELKQAEQYNQDVCAGLIPDYQNIKPTCEGE

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