Scaffold Ga0222716_10010065

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10010065
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7162
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F021759	Metagenome	217	N
F035302	Metagenome	172	Y
F077020	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1001006510	F077020	N/A	MPKTLKWGQEYSVLLDVGAITDAFILDSSTLDGTDVLNGSTDFVDATEYILAVSVQRGRGAQTEQFQPGTCRILADDRASGRLFDPANTASTWYAGDFDLAPRRAIKVLAGTAELFVGAITDLDITYEMPNLSFASIIAADGLYELSRTSLTAFTPSSQLTSARVTAILDRAEVAYSTALRDIATGVATCGTVAYPDNTNTLTALQAVAVAEDGRLFANRKNQIVFDPRIDFTFSTAIASFGGTATNEIPILSIGVAYGQETLFNRVQVDVEGGTAAQVAADSTSQGKYGVQTLSFSQVPLVDEAAGSALAQNLLDKYKEPIIRFNEISTSLNACGTALWPTVLALDVGDVINVTKTYTTGLPLTRTDSVFIESVNHDITTSDHRIRFGLGQAQLLTAFILDQSELDDVDVGLV
Ga0222716_100100652	F021759	GAGG	MDAGLAVVFAAVVAALGGIIVAIIEMRNLAKENRKDHAIVQKRLDNLIDMVGKQGAKLTSHLDWHLTKEPSKDLKVKQVATRKKK
Ga0222716_100100653	F035302	AGAAG	MKRPYTGSKDGIAAGETKGLRVFINQMTEMYPALWNNGSYVNRPMRGKKTLSVHATGRAVDLSYRHMPKEKRGIAEGGRKQAMEAIDFLVKNADAFGIEAIFDYFPMPHGRGWRCDRGSWSIYTKKTISGAPMGDWIHVEVSPAMSNNPEAMREAFAKVKQEAV
Ga0222716_100100654	F003378	AGGAG	MDQDMKIKQHPTAAKFFDIGQRLFSLFLSTALPAITTGAVIGVSVTKSAMMAGAMAVITVVQKLAAASVDGVLTSEEVRQAFGASNGKKKK