Scaffold Ga0222716_10002374

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10002374
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15275
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F003213	Metagenome	500	Y
F018918	Metagenome	232	N
F028783	Metagenome	190	Y
F034555	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1000237413	F000888	AGG	MSAQYFAQLDQNDFVINVHCVTQEFLEANPDRYPGVWVETFFDTDGKTYAGIGFIYDFDTQDFTPPPKIEPIDEP
Ga0222716_1000237414	F003213	GAG	MTSKKISKAKRQIGDQTTKGGLIGLFIYWATTNNVDPGLISLLVPIIASVLAWLSTKIGDPDLACLFIPNDEKKDDNP
Ga0222716_1000237415	F028783	N/A	MTKKKTITRRPYTAVLAPVAKGPLQGTDEFIRQVVKRSGGSLWNNGSWVIRDIRTKPGQISNHARGLAVDFSYRKMTDKGIVEGRKTALPFVQKLLRNADTLGIELVIDYQLNRSWKCDRGTWIKGKWSGGDWFHIEISPAMANNANLVKQAFNDVFKDMPKTV
Ga0222716_100023744	F018918	AGAAGG	MAVYSVKQKYLTDNYAVVVLVTNADPLEVGQSVTIAGVDATFNGTYTVAALPEYYFIGVDEEGFFLYDIERPIANQVLYAKTADNVNIVAASGTLTTTPVCTWITATQIEDWLGIGTATAADTAFLTQCAAASNNFCYSRRREAGYKNESLTTVPNEAVKLGSIMYGGALYRQRGGVQDFASFDGLGTGNSFGLSPMIKQLLGVDRPAVA
Ga0222716_100023749	F034555	N/A	MSNPKLVLQIEGIKETLAELNKYDKVYRRQVTKDIKTAGAPIIATARQLIGETPPLSGMVRGKLIKGREVYWTNRTAKAGLKIKVGRRASKGGTVQFKDKFDAENNPRESHSVTFKARPYQLMVAQQMDAAGAIYDHAGIKTKNTNFVNNLNVEVGSQPRAIDPAVQQHRETVQFAVKRIVDEVSKTLNKKLKVRYGN