Scaffold Ga0222716

Basic Information
Taxon OID	3300021959 Open in IMG/M
Scaffold ID	Ga0222716_10001373 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021959 Open in IMG/M

Scaffold ID

Ga0222716_10001373 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20351
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (31.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

20351

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (31.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0283	Long. (^o)	-122.37	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0283

Long. (^o)

-122.37

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F030556	Metagenome / Metatranscriptome	185	Y
F035552	Metagenome	172	N
F087067	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1000137310	F010877	N/A	MTTKQLLIALTGTGLPKGEVKEEMFKFYNSKVGTGKYFVRRENPKTACGSCIQRVKSNIWKWYHHDESAPTYKGLVFTGRLVAYNMPLYKTE
Ga0222716_1000137326	F035552	GGAG	MSIADDLLLKADLDILYWVLGEVAEKVKEDNDFIKVLLQLEQFVEIHKTRTNDMVTYRDTIERARNEYRSLKLKYDGTKEMLTQTRSMLHKVMNEKLEEDVDNQF
Ga0222716_1000137332	F030556	N/A	MANDKTFVAKTSVVSTQYGQIVKIALGPQDFEVLQNAKNEKGWVNLEMKDKRDGGKYIQLQGEYTGKPKAVAVNDTDDMPF
Ga0222716_100013738	F087067	GAG	MRILILLMLITLTSKGQECNPYHTIPKYELQSKKSAGLGYVSCFHAQGVVAEVGYDNVFIGVLAMGEGHHGATYSFVQYDVQFGRARIYGGPVYRLNNQPALCIGRVGVDFQLYRWVYASLSLLQPNKDVNYLHVGLKINY
Ga0222716_100013739	F006322	GAGG	MIMGRNKKGEVVSGRGSELTTLQSEFLDRVSKEGMEASAKIARDLNYTSYYRDRRNQGTAFYKELMQMANSEMKSIDSAKGTNLSALIKIRDLALADGDMKAAMEAIKIINDMQGYKAPTKVQQTKLDIKATIDLTEPNEDTDFIDVDYIDQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222716_10001373

Overview

Ecosystem & Geography

Associated Families

Sequences