Scaffold Ga0222718_10415861

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10415861
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 668
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010001	Metagenome / Metatranscriptome	310	Y
F021403	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_104158612	F010001	GAG	MQDKASKDEVRLLRAQIGNLEVQVADYQQIVEELSDKLGVYEKKYGTVFVSSRNTSDQK
Ga0222718_104158613	F021403	N/A	TIDMIPWWAEPFTITPVIFLLIMKEHYDSLNPLHWWPMFWGYEAKLPDEDRITIRPLDTERIMEQHGGRLNVYIVDFEHIKFRRRKDAVIFGLRYF