NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10288721

Scaffold Ga0222718_10288721


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10288721 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032867Metagenome / Metatranscriptome179Y
F047975Metagenome / Metatranscriptome149Y
F054424Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_102887212F047975AGGAGMTKEEWAENTVDDMDWKDLARIAYDVMLDSVKDMSDKDFQEYLIECGYEED
Ga0222718_102887213F032867AGGAGGMDELEKMIDDLIDNHYRVQHLIGTEADESEYLADIEEEDDENL
Ga0222718_102887214F054424AGGAGGMMKTYKVYTKWIDYSEIIVDAKDEQEAKDFVAMGSYDPSEELQTGNGLDYGFEDEEVYKIEEETYG

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