NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10189025

Scaffold Ga0222718_10189025


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10189025 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1132
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022417Metagenome / Metatranscriptome214N
F028777Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_101890252F028777AGGGGGMLGLFARNKHSHTEILFIEKDISEFRKIRYILEVEGKICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKEECSCDFKAKGKLNMDGTPRKHYAYLKDWAI
Ga0222718_101890253F022417N/AQMPKFLEDYTTVDELISKMNKEYPESRLISEMVGYGDDWVIFKSSFYETKEDAEPKAVAYAKQTSKDHNSWFEMANTKANGRTLRIVFSESTLAEEMIGIAPSKEAAPKKKSLDEKVKELEAEGLVEDITDSKQAIMNNIKEFALEITNQDLDKARAFTAQALGALGMNKTEVSFANMQSVKNKIQDIATEARTYVDKGE
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