NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10175318

Scaffold Ga0222718_10175318


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10175318 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1189
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005537Metagenome / Metatranscriptome397Y
F068127Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_101753182F005537AGGMSDNVKFINELERLLNQKQNDYGHFDNTSFVMAGILENYLSVYNNKEVKVPLKFFGIFMIFLKLWRVMQSESYKKDSFDDINGYAELLRRLVINDENSKK
Ga0222718_101753185F068127N/AKDEIKKQTTETKLTALYSNWKKNNNSDQEIEKLFEQQQKQIQKIGGQQNVNKW
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Institute for Fundamental Biomedical Research
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