NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10138974

Scaffold Ga0222718_10138974


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10138974 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004220Metagenome448Y
F040578Metagenome / Metatranscriptome161Y
F062710Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_101389743F062710AGGAGMASTIKVKFRISLPAEKEFKIVDKDLWEKSKNDFVAAANDEDGQQILANDYIELYGLSPVDNSYFEDDPNREVESIEQIIDETGKSI
Ga0222718_101389744F004220AGGAGMVEKDKLDWCYYFNSIFCRPNNAGWIRLCSKDSNEGFSIRLNQTHVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMQYTNGHTKMFHKENDEWRQL
Ga0222718_101389745F040578N/AKRFAIYKPAMKIREFLSAGGKTIDLDWDRERGFIATEDKDKANMASKTEKATFTLK
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