Scaffold Ga0222718_10117013

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10117013
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1547
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008887	Metagenome / Metatranscriptome	326	Y
F058110	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_101170132	F058110	AGGAG	MDEYNNVAISRITFFKFDDEGNELENEDGTTKEFKLKSVRFKPLEYLCEDLDADYLEPIEGQS
Ga0222718_101170135	F004343	GAGG	MTQYKEMIDEARQLLNTERENIPSMSRNFQKDYWILTYPCGKIVKTYQDKRKRDIVIQESFNGGEL
Ga0222718_101170136	F008887	GGGGG	MSRGCCNECGYKADYIIDNNNYADNGYKDLNQVPTDKMLCGVCYEENENE