Scaffold Ga0222718_10093043

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10093043
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022417	Metagenome / Metatranscriptome	214	N
F050395	Metagenome / Metatranscriptome	145	Y
F072865	Metagenome / Metatranscriptome	121	N
F077965	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100930432	F050395	N/A	MSSFYPIARKNKFTWTYRFLYWNPDIARINLYTIDTDKGFQVAESAAWGSATFDGCTNMKYIGKNKMEVDNGTNA
Ga0222718_100930433	F022417	GGAGG	MAQMPKFLEDYTTVDELISKMNKEYPESRLISEMVGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRTLRIVFSESTLAEEMIGIAPSKEAAPQKKTLDEKVKELEAEGLVEDITDSKQAIMNNIKEFAMEITNQDLEKARAFTAQALGALGMSKTEVSFANMQSVKNKIQDIATEARTHVDKGE
Ga0222718_100930435	F072865	AGGA	MKNIIVKFIGVKSYKVSDETTTEEINNIFINDLANIPDSFAKNIIPIAYAEEE
Ga0222718_100930436	F077965	N/A	MIELFIGCSLLLGDGILTEQSIDDYFLCNHLQDVKQWYGLTNQYFGDDTLFALAVMSCES