Scaffold Ga0222718_10078461

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10078461
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1998
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F010532	Metagenome	302	N
F020816	Metagenome / Metatranscriptome	222	N
F032867	Metagenome / Metatranscriptome	179	Y
F067760	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100784611	F067760	N/A	MRVRRIDMFIMRKYGDYCDEALRYKEFQKTFQAWKDDNIISLVKEYKEY
Ga0222718_100784612	F010532	AGGAG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNLSEVDIIHRIEEHMSYMVSSFLNKSYESTSSDEQALRGA
Ga0222718_100784614	F004856	GGAGG	MSDWIEGTKPKYIEARYSAYLSWDLEELGIDWDEVEDWDLQRADLEITFKDGTKQNYENWQDLDIDYKHNFEEVLILDEGWDKVEGLN
Ga0222718_100784615	F020816	AGCAG	MMMGDNMKVYEITVSTTVQIDSVDDYAESKEHAIDIMWDRWDVYEDDLRITNVKVWEEDD
Ga0222718_100784618	F032867	AGGAG	MDEETKQLIDYLVDGYYRDAYLIGTEADESEYLADIEEEDDDI