Scaffold Ga0222718_10062819

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10062819
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2302
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003365	Metagenome / Metatranscriptome	491	Y
F012861	Metagenome	276	Y
F019967	Metagenome	226	N
F064509	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100628192	F003365	AGG	MKTIGKEYLKKEEGGMFTADHMSPSQLNMNLDQWLYNYCVLTASERKKLPANLKMIFGGLAGQAMQDMIQYDLTVEEVLKGKK
Ga0222718_100628193	F012861	GGAG	MKNFDKIRQKLIDLEEINFTNDEYHSVFQMAAYDLLTHSEMRSLILAFCEKLNPELSPREYDNIKDHHIHLPD
Ga0222718_100628195	F019967	N/A	MKKVKLEPIDVELALNTASKRFIGNLKMGKGFSYGYQGDYRKQIADSFLGALGEVCYAKAFNKYFNNSYTDNLERYNDSDFQGNIEIRTQEKKDYNFLLIRPGEKKGKYILIIHDGDYEFTIKGWFPFVTDMPERLTNFGYQNRPAVYKVDIKELYNMEDI
Ga0222718_100628196	F064509	AGAAG	VDNLLDNELIMTDKTNIYGDYKICCKCEMKADVVENGNDLCASCYFKHHTNSTLEEYEKRNKEIDIERERKRNEKS