Scaffold Ga0222718_10060146

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10060146
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2368
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024111	Metagenome / Metatranscriptome	207	Y
F025731	Metagenome / Metatranscriptome	200	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100601463	F024111	N/A	MNQPIFAFVFPFDSGAEFRCKRNFPDAESAANWAVDIILKEGDDYCYFKEVGSADYVFEPALESHTVVRWLDGEPTWEMYDVTD
Ga0222718_100601465	F025731	N/A	MPNSTTQRKKAQMASALFSDVQFLSMDCIRNTAEFDALTCDEQMRLEDIVNTAY
Ga0222718_100601466	F055727	N/A	MQYNHFVEFSVSEMVDAYTYFTHIRDYEGCRLVAAAFDSNTRIDLKGFFND
Ga0222718_100601467	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSVGVMDDGQRFIPKYGYVVGGIVPEKSCDMDNESAFKHTYNRLVYQAELALERESVVVIGTWVEDGKIVFDLCNVIDDEQEALALAAKRGERAIFDLEEQREISVNTGA
Ga0222718_100601469	F027835	N/A	MMKTQQHIDALYERMKTAGGFECALIMAYMKADGGNAKLLEDAFKGTRFDLTPRPKYNHGVEVLRAAAYWSGNRDEYLNDDKTAYQ