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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021958 Open in IMG/M |
| Scaffold ID | Ga0222718_10058907 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2400 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028777 | Metagenome / Metatranscriptome | 190 | Y |
| F035554 | Metagenome / Metatranscriptome | 172 | N |
| F050395 | Metagenome / Metatranscriptome | 145 | Y |
| F077965 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222718_100589072 | F050395 | N/A | MSYFYPIARKNKFTWTYRFLYWNPDIARINLYTIDTDKGFQVAESAAWGSATFDGCTNMKYIGKNKMEVE |
| Ga0222718_100589073 | F035554 | GGAGG | MAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKEAAPQKKTLDEKVKELEAEGLVEDITDSKQAIMNNIKEFAMEITNQDLEKARAFTAQALGALGMSKTEVSFANMQSVKNKIQDIATEARTHVDKGE |
| Ga0222718_100589074 | F028777 | AGGGGG | MLGLFARSKPLSTVEILYLEKDISEFRKIRYILEVEGKICSLDPEFSASGNLRKAVHRLNRDYNSKIYKEECSCDFKAKGKLNMDGTPRKHYAYLKDWAI |
| Ga0222718_100589077 | F077965 | N/A | MIELFIGCSLLLGDGVLTEQSIDDYFLCNHLQDVKQWYGLTNQYFGDDTLFALAVMSCES |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |