Scaffold Ga0222718_10054691

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10054691
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2514
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F015990	Metagenome	250	N
F083372	Metagenome	113	N
F088712	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100546912	F015990	AGGA	MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIEDINNHVEELLTNNKLQSKTTTRNV
Ga0222718_100546913	F083372	GAGG	MIMQQYKISYPRAEFAYARHLRDNLKHEGEIIYPHQPSCRLLEDGSWLLITITGERLGTVSPNGTVRLT
Ga0222718_100546914	F002399	AGGA	MTIKTKSHKSIIGQLRKKYGLKDNTPIHKVEQIMTPEDWQAFSEALTFPNGKPTNRGNQ
Ga0222718_100546915	F088712	AGG	MYIPIETQETHNSKSYIMNAGLVKGRNHLIRNGWEYCANRTSLTNGWNTGSYNRFMKCWTFDNDILNQRDVNLTEHNSTMEHLGWK