Scaffold Ga0222718_10053152

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222718_10053152

Scaffold Ga0222718_10053152

Overview

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10053152 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2560
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065673	Metagenome / Metatranscriptome	127	Y
F074968	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100531524	F065673	GGAG	MTDQEIEQEVDRQKQEAIAKHMSDIKVMSKLISAINEYLIRFGRTSNVHDQCFDLKTQVIKNRDHLQDWVNKI
Ga0222718_100531526	F074968	N/A	TKFKDYFDRYERTLKERNRSKIRFESFKAFRDDLRTKVVNERELAKHL

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