Scaffold Ga0222718_10052504

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10052504
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2578
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F028791	Metagenome	190	N
F038218	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100525042	F028791	AGGA	MKWWNVLTMLVVLAGGAEVQAQGYDNILWSPKIDDIPETPFLPVIQDDKGELLAHSSENIWGMVWTSLPEDGLNNHHKREFSVGDYHYLVENRIPSPVEDDWSIGGTLHHRNGALDFHSARRYYAYATVEQKWAAQQAGWIHIPISADHEGHWVMINGQIVWEIPVGERFTGEITAYIPEMTNTLKLEWGGKNDAADIHIEPARFYPDSTTVPEPSLGDLIDLIGNGIGGLIGL
Ga0222718_100525043	F002942	GGAG	MTEEQFTAFVVLLAAVSLPSVSLLFAGAWELWSYSKRVEP
Ga0222718_100525045	F004131	GAGG	MRAKRTTVVADVSQFPFSVMRRQLITPLVREAAELLWPAERRRVTVLLRAPEFWDECENADLEASEELADICFDLWVGR
Ga0222718_100525046	F038218	AGG	MNTELLNAIQNMLINFANENAISLADEFGTREKFSQFVFSFTIKSLVDICGLDTKTAYDFVMGDGAFAKLADECWQQLNTVAA