NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10051605

Scaffold Ga0222718_10051605


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10051605 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2607
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002190Metagenome / Metatranscriptome585Y
F025307Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100516051F025307GGAGMPSEKTKKLLEGLGKITDSAPKAFVEQKYHSYTNRYYPNTLHTLPASYDKAKRKKDEDGDEYIMIDRVYGSLYDDHLLQKDGSIYAGKLYKKRRLMTRKDPMTNEKTNFYSA
Ga0222718_100516053F002190N/AMSNKLSYYVCLVTKDGKTEEYGYGLPYKDIMEAVEEHYKDGADAVVMEMITEDEFNDRLPKPY
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