Scaffold Ga0222718_10046622

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10046622
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2783
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F028791	Metagenome	190	N
F064684	Metagenome	128	Y
F091788	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100466222	F091788	AGG	MKISKTTISMAARRGVAMAVTLEDELSNGQTSVEFARFEDGEPIDEHTARYTLTADGLFFAGGCGDTEEWPYWIQDETHLRALLPAIAAAI
Ga0222718_100466223	F064684	AGG	MSNEQRIAQAAMTIAGSIFEECNQPTLVDKLRHCCSWRNQGTDGDLTRADRESLQLLLDEAEAAAGVCLC
Ga0222718_100466224	F004131	GAGG	MRAKRTTVVADVSQFPFSVMQRQLITPLVREAAELLWPSEQRRVTVLIRAPEYWDESENADLEASEELADICFDLWVGARG
Ga0222718_100466225	F002942	GGTGG	MTEEQFTAFCVVLAAVSVPSVSLLFAGAWELWRYSDEKGKINESNE
Ga0222718_100466228	F028791	GGAG	MRWWNIAAALAVLAGGAEVQGQGYDNILWSPKIDDIPETPFLPVIQDDKGELLAHSSENIWGMVWTSLPEDGLNNHHKREFSVGDYHYLVENRIPSPVEDDWSIGGTLHHRNGALDFHSARRYYAYATVEQKWAAQQAGWIHIPIDADHEGHWVMINGQIVWEIPVGERFQGEITAYIPEMTN