Scaffold Ga0222718_10046418

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10046418
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2790
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011124	Metagenome / Metatranscriptome	295	Y
F016757	Metagenome / Metatranscriptome	245	Y
F028350	Metagenome / Metatranscriptome	192	Y
F037204	Metagenome	168	N
F074150	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1004641810	F028350	GGAG	MRIKPINPVAKAMAQSRRRTQAVPDKTKYNRNKDKDNANKSRENEVTQNETPQSKA
Ga0222718_1004641811	F037204	GGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIITYLQFIHDSEKGNEN
Ga0222718_100464183	F011124	AGGAG	MFDPDKTYGTLVWDMTVAVWDDDADDYVRNEDGSIKLFDIPNYDYSYICDGIDVDDLHERDEGGTYT
Ga0222718_100464184	F074150	AGGAG	MPKYEVTRSYTVACVATIEAESADQAKIIAFNFDGIHWKEYDGDYDAEITVEEIDNV
Ga0222718_100464185	F016757	AGGAG	MPKYEVKVEATTQRDIIVDAVSEYEAWVLAQIEMRGLVGGENTQVISSKEINDA