Scaffold Ga0222718_10043607

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10043607
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2899
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F023859	Metagenome / Metatranscriptome	208	N
F044529	Metagenome / Metatranscriptome	154	N
F081365	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100436072	F044529	GGA	MLIQEIIYLGFVVYGVISLIVTLAYISLKLDDKRLREKKKDLYDVTDFESRLKEGEVLNWCNLFTGTHHFDAPADDGNFVCLKCWTYEGYEMEGV
Ga0222718_100436074	F020913	AGGTGG	MLGLFGRNKPLSVVEDIQLDKEPSEFRKIQYILELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEICNCDNKQYAKLKKNGSPYMHNAYIKDWAL
Ga0222718_100436075	F023859	AGGA	MKKVIVKFIGVKKYLVRDDADPEKIKSMFKKDLELLPPVWANNIEAVMYAKDVPEEEE
Ga0222718_100436078	F081365	AGGTGG	MMVGIIGTVVNIVGANMPEVNKNNRRFFVEDEYNLYDVKKARPFWQDICTVNGWDIVKDDEDFKEDFVCQINNELYYMELQV