Scaffold Ga0222718_10040016

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10040016
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3056
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F006094	Metagenome / Metatranscriptome	382	Y
F020896	Metagenome / Metatranscriptome	221	N
F024295	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1004001611	F024295	AGGAG	VKYIVELLLTYEVDAPDMRQAQTIAMQRAIDLCDSEDDLFQHITKDMKCVSSMVRDVSIVDEEIDT
Ga0222718_1004001613	F020896	AGGAG	MTKKKVKSEWEINKEQATATWKSMTPKQQQAVLEMLQAFVPIRESVSELCEISYEDLRNMDKAWFVMRRLIVDDNVEVKYWNY
Ga0222718_100400162	F006094	AGGAG	MLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGHSQQYAEDTAEDWVIGARQ
Ga0222718_100400164	F024295	AGGAG	MKYIVELLLTYEVDAPDMRQAQITAYKRAIDLCDSEDDLFKHIDKDMKCVSSMVRDVSLVEEIDT
Ga0222718_100400168	F002430	AGGAG	MLTINLPKKQVNAILVALDAEIENQLGGRPVDWESFPEVAAMLMAYYTTRCKFEEENEDAVA
Ga0222718_100400169	F006094	AGGAG	MLLHEFYSDDDCSRGDTSYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGHSEQYAEDTAEDWVMGVRR