Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10039629 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10039629 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3074
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3074

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006971	Metagenome / Metatranscriptome	361	Y
F028777	Metagenome / Metatranscriptome	190	Y
F035554	Metagenome / Metatranscriptome	172	N
F039398	Metagenome / Metatranscriptome	164	N
F058532	Metagenome	135	N
F072865	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100396292	F006971	GGA	MMYQGIEYKKNQKIKFVIPTDNRIIDPQTKRILWKYGTIQFFAKNTKAAWILENGTKETVKISLFCILPVH
Ga0222718_100396293	F039398	GAGG	MEYAADDINIGYMTCLMFINSEHTLVDKLNNITEIQPIDHQGGVSFDLVLKSLPTYVEITMNHNGNFDIYTKTLKGETEFKDEVVETLINFLHIFYVNMVDDENKLLLNALDTTTYRKIAKRMHYRENFGNDVSGD
Ga0222718_100396294	F058532	N/A	MMDGTIGIVPNIVGVDMTLNQNGRRQIVQDEYDLFDNKARTSWDFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSLEKLSNFYISKSKIDLLRGYVDQYINVEAGCVFMNCVPNKFATINIKDIKDDYLQQNDKGELYYKIPINQNVNYFTSGLIDGKCDCLENHLEIMQRSKGRMRHLEKDYNIRGFNGICCR
Ga0222718_100396297	F072865	N/A	MKKIIVKYIGVKNYTVNYDVTQQEIHDMFQTDLSTVPVAFAKNIVPIAYAEEE
Ga0222718_100396298	F028777	AGGGGG	MLGLFGRSKPLSTVEVLSLEKDISEARKIRYILEVENFICSLDPEFSASGNLRKAVYRLNNVYNSGIYKEECHCDFKQKAKLNLDGTPRKHYAYKKDWAV
Ga0222718_100396299	F035554	N/A	TGQGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKAATPKKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKEFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQSVKNKIQDIATMARSEIDKGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10039629

Overview

Ecosystem & Geography

Associated Families

Sequences