Scaffold Ga0222718_10038053

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10038053
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3152
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F034894	Metagenome	173	N
F037180	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1003805312	F037180	AGG	MSRIAKVDDKSSLNISLSYLLQIIGVAAVVVWGYAHTTERIDFNLRETQNLRANQNKYLFPDIRRLEEQVVKLEKEVIILKTELEAYKKQNANNK
Ga0222718_100380533	F034894	AGGA	MNVTFNLLGGGELNIPPRAISGFYKDQFTSEVIVEVGKDEYKVRDSLDEVKYILGIAR
Ga0222718_100380535	F008281	AGGAG	MNLMCNTKHGAIEWRWKDSGQPSPEYKSLNHQWWIPKKPEFELVTKVDASIKQEIKDEIWEDMQSDFEYQKSIYKIHKLNLKEKK
Ga0222718_100380537	F007417	AGGAG	MTRYTLQVQLPSLGWVVAIKTSDLFYMARKRARLIAQGHKVKLTKEKK
Ga0222718_100380539	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLLTEFGRSKYTVQVKSRRATKEKKFIFAAETSRSMSETYRNYHCDILAFVFFDGEEKRIMFKANTSSQNYFTFDNKVITESMELDSLKETLDNLSSVPVLNPII