NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10037401

Scaffold Ga0222718_10037401


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10037401 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3186
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028777Metagenome / Metatranscriptome190Y
F035554Metagenome / Metatranscriptome172N
F072865Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100374015F072865N/AMKNIIVKFIGVKNYKVSDEATLEEIHDLFQTDLSTVPVAFAKNIVPVAYAEEE
Ga0222718_100374016F028777AGGGGGMLGLFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICSLNPEFSTSGNLRKVVHRLNNSYNLSIYKEECNCDNKQKANLNLDGTPRKHYAYKKDWAS
Ga0222718_100374017F035554AGGAGGMAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTATPKKKSLDEKVKELEAEGLVEDISMKAQAVMDNIKDFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQSVKNKIQDIATLARTEIDKGE
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