Scaffold Ga0222718_10036869

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10036869
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3215
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002859	Metagenome / Metatranscriptome	525	Y
F007401	Metagenome	352	Y
F044794	Metagenome	154	N
F096927	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1003686910	F002859	AGGAG	MLAIIRPDLYEYHALPMTDNLFWRRIENLRRAALTAEDFEFRLLYYNQMMELMKRCP
Ga0222718_100368692	F096927	AGGAG	MQQIKRHVELAEGVLETEKGLKAFKHRSFLMRLYNEKLSRLSENKRNQVNIEDTERLAEKYNWQLEELKTRGIARQKERLKTRENFLKKEAEILLKQIEEHNSILRGEN
Ga0222718_100368694	F044794	AGGA	MGRKTPLKERLLREYAKLSKIALREPRNGKEVFTRMRWEKIRNILWRRYDYMQSL
Ga0222718_100368697	F007401	N/A	MSDQEILKQRDLLDAILASRTTGQYDRLENMKVMDSIYFREKLPKNVILFPLQRIKRYVHKTTRKPSKKSI