Scaffold Ga0222718_10033813

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10033813
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3391
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003880	Metagenome	464	Y
F031256	Metagenome / Metatranscriptome	183	N
F040053	Metagenome / Metatranscriptome	162	N
F048233	Metagenome	148	Y
F078648	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100338132	F031256	AGG	MSIPYWQVGIKIGAESGQVNVHSDALPDASWEYAIEHAMDTARAVHPNERIEFLYVKEYN
Ga0222718_100338133	F040053	AGGAG	MKAYLIDTKHELITEVDVKDYYHKLELLNCRMLEVYPYNLNGNDIWVDEEGNLKESNYFAELDVDNEGIANYVISGNALVLSCDDEGNSTDVKDLTLEELKSRIKFHGRRFIESNGHGFTTRAWEDA
Ga0222718_100338134	F048233	AGGAG	MADVSAKVKEINLKVKPQELSILVDALYECLEYMESANDDFSQMTLNAEGKLPFYKVEKQSDPHVRKWFIKYTRLARQLDRMYVKVRKLGGTW
Ga0222718_100338136	F003880	AGGAG	MAKKVKEINKIINLTQKDARDILQILEDLRRINARTDDKCPIDYDMICRLDSIEHILARIVGAEVECEHGHYSRWSGSYEYEK
Ga0222718_100338137	F078648	AGGAG	MIKLPTTTWIELYSELSQYAEARAFPHRNPYNDDGSRRAYTEDDFVQIVNDVEEIMSQFFEKEND