Scaffold Ga0222718_10024995

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10024995
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4076
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019389	Metagenome	230	Y
F048298	Metagenome	148	Y
F060808	Metagenome / Metatranscriptome	132	N
F073432	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100249954	F019389	GAGG	MGDNWKDNFIKFVNKLSRKRGWKCDDMNPYFYQINLLHLSNAKTLREYKQQQKKASK
Ga0222718_100249955	F048298	GAG	MKKQYTFWREVSKQVREECTIEAKDLDEATRLHNEGYCDYVEVDSLDEHEILDEGTIESETK
Ga0222718_100249957	F060808	GAG	MAIDFDALDLVRTKNKAKRHEAIKVQKREQKEKDIKYFMDQLSSIKRDYDLCQDPAVKKLLLDKWYGVVKLCTKKIDE
Ga0222718_100249958	F073432	N/A	MTINNYDTVIKLADKGEVFEYHVGYLPRDRFFDNHVRDKANLLRRLAEGDVVELFQKRLTYGNINHDPKFQYLARKI