Scaffold Ga0222718_10023404

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10023404
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4241
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F048634	Metagenome	148	N
F057748	Metagenome	136	Y
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1002340410	F048634	GAGG	MTPLEAIEETLEVLSQLQLNGSVKMEDSDKISQCIQQLHSIRFNIKMKENQNV
Ga0222718_1002340412	F040869	AGGAG	MNMRVFEQVYNELSLLQEEDADDLNIAEESLMAAMTFTMTNAPSVLNGLCLISNTFNGILAEYTLKDIQLRGE
Ga0222718_1002340414	F029404	GGAGG	METVDFVEVELGGDNWTITWDVSRRKKIKTTGEKSGLKYTIYSLTDLTPAQAYDIAMVQLEWLKKDQSYVI
Ga0222718_1002340415	F066135	AGGA	MNGLRIHSVDNIKVKREDYESFTTITVTVTDKTDQDFELTLFTDKGFVPDMEVQDGDS
Ga0222718_100234043	F057748	GGTGG	MTKVYDFDWHRLKKEDALRKSLGYDEELWLMMKESGYDVTLQEERDKFFKDLEDLE