Scaffold Ga0222718_10023151

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10023151
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4266
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F068594	Metagenome	124	Y
F069852	Metagenome	123	Y
F100033	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1002315112	F100033	N/A	MGGGKVMLEDKHCQIILKNEDEETNKILMDFDLILRTNDKRTQYEYFDVYDYKNNQMVASGIEIKK
Ga0222718_100231513	F005373	GGGGG	MNEGLKNIKQIKDLTKKVRILSSLLSQMCCQADEDTPAEYRTKHFRSTMDDSYEYLEEIGYLRWKK
Ga0222718_100231515	F068594	AGGAGG	MKEYVFWQEVKKYVREECVIKANSLDEALEIHNEGGADYKEVHCFDEEITDEGTDENRSN
Ga0222718_100231516	F069852	GAGG	MKIEVTRSDIQQGEAGNSQECAIALALQRHFKTNCAYVSGAIDQDEPIIKVDDKQFKVSEKDIYNVGTFIDLFDDYVINGDDVSIDETCIPQPFEFEVMEGK