NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10020494

Scaffold Ga0222718_10020494


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10020494 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4609
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013880Metagenome267N
F016522Metagenome246N
F034164Metagenome175Y
F095405Metagenome105N
F099216Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100204941F034164GGAGGMSKPKRADPTPEEITAEAAKIRAEWPEHRWRKEEPGEPPVDLPVVKLDKRWNGVLM
Ga0222718_100204945F013880GGAGGMARFIPDNEHANSLTWLYDNMEVGDEARVLRSRKMAYDLLRSAWYRQSRPEKMALGYDVPWLYLEPAVARVNGEVIEATMVVRVADEVECWAKRKKFLKEGVT
Ga0222718_100204946F016522GGAMVHMVYKLDSVGRRRWLVGQLTAGDMAEDITRKPISRHGWSPRQGDAQRFGSAPEARAAADAVEHAVRRLGLCQVMEVV
Ga0222718_100204947F099216GGAMQVHDMEVGQSVEVPNATVKQGQRGTSWARRKASSCRRFSVTESGSGVIIERLPDRELVTDAIRNGGEKIFVRQSVEAARQAIRRAIRAGELSGFWHVEPSGSGSMLQQMATQADVDAAAAEYRRWRRARR
Ga0222718_100204949F095405GGAGGMGGNCQGMGFPVCPQCRCGLLESADTEIAEWGTVVHCEECGCGSMVYVEPDGSYSSYCFAGHNWHMLNGCKVCSLCGAEDEGGL
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Institute for Fundamental Biomedical Research
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