Scaffold Ga0222718_10019604

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10019604
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4730
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F015990	Metagenome	250	N
F027830	Metagenome / Metatranscriptome	193	N
F066237	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100196041	F015990	AGGAG	MTGKGSGRRIEDINKIRNNWDSIFKKRDKKQITEVTIEFEMPGNPSINDINNHVEKMLKENKIVYTTITKYI
Ga0222718_1001960411	F066237	AGGAGG	MFDVISYDANGNEDKVMANKLKQGFAKLYDNTCKECLGTGKRKITFEDCFGNPVPEKTMYLKCKCKEVL
Ga0222718_100196043	F027830	AGGAGG	MNFDTAFGKYSAHYRDRGFGTQLPNISRTHSKTTGDGGYLLRDENDMHIAYITKDGKVEA
Ga0222718_100196044	F004603	AGGA	MIFSININGNIVDWCYNLDCQEKQFHRTWIPKLSDIQIITKNLGDLTVSQVRKIILEDIQPDIQMVRDHNNKVARDRRQRL
Ga0222718_100196045	F002399	GGAGG	MALKNKSHKSILGQMRKKYGLKDNVDPKKAEIAMTPDDWKIFSEALTFPNGKPSKREDK