Scaffold Ga0222718_10017024

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10017024
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5138
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004488	Metagenome / Metatranscriptome	436	Y
F018079	Metagenome / Metatranscriptome	237	N
F021539	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100170241	F021539	N/A	MNKKLEWCIIVFLVLILVGLSACSPNPHPDKQPPHETEQEMNDSITKDMEAMDREQAMKDNDGPTNFTGIVDALGCMFAPDDCPLKKRKEEQKMDR
Ga0222718_100170244	F004488	GGAGG	MFRHIRRWIDAYIKNLVDAYDPPKPAVYKIGHKKYVKVKHLRTGSKAKGPYIK
Ga0222718_100170245	F018079	GGAG	MIYIISRKPTWFHTHCLTPTPGTPLWFDPTWVIGDCELCKMDIDNQDWWNNCSYNQSQRKFYDIIEKELKVWI