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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021958 Open in IMG/M |
| Scaffold ID | Ga0222718_10016868 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5167 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010091 | Metagenome / Metatranscriptome | 308 | Y |
| F037248 | Metagenome / Metatranscriptome | 168 | Y |
| F098225 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222718_1001686810 | F010091 | GAG | MNTMKDIDKLLSEAETGKHSKILDRITDEAKPFWLGCEERVIAGKQLKPYVVSRLLKEHFNIKISESAVRNHFINLLDNNGK |
| Ga0222718_100168687 | F037248 | AGGAG | MIMPEGMQAATPPEPYLNRKGKQPSLLTNDKVRILLSSPEQWFIISTKDKWISGVKANIESMTQKNITHLSDKGKFEIQQRKNKTGQIDIYCRFVPNYEEEIL |
| Ga0222718_100168689 | F098225 | N/A | VPNSKAYPYPEIVTGEKWEVIGTVNNSPEGSTDNLNRQMTVPLDRECEECGINHSRMIRRHELGHAKWSPKTMGKLKPGVRAEAVHVLEEVRVNHLLYEKELALYEPSKCLDALQQETMQLVYESGIAEIILLGLASKWKVPDNDTNRRFANYKYNDEWVTMSACFNMLQNDDTVTDFRKQQIKYAEQVVRRYYQSITNHGYGQTISYRKVQKYAESLSEILDMFRDKPEHDEVYKPKPKPSSSEEGEGGGESQDSNELGGGSLEQRTKQDIQELLYTSSSGTGKWGEMFTHQPPLTVNLQARLKGGRAYRPADFGYNPKYINRYCIDKKIFKQKMTQLGGTILIDASGSMSFDGEDILEIMQMLPAVTIAMYNGRGYTGDLRIIAKNGKRVNQQYLDRHSGYGNVVDGPALEWLGTQPAKRIWVSDMHVFGAKGDVAGFNLMADVNKLVRKYNIINLKNIQEVKEHGLKLNM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |