Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10015249 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10015249 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5494
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5494

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (42.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005819	Metagenome / Metatranscriptome	389	Y
F006971	Metagenome / Metatranscriptome	361	Y
F022417	Metagenome / Metatranscriptome	214	N
F050395	Metagenome / Metatranscriptome	145	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001524914	F005819	N/A	MDYIDDMSLALPNQQQVGESNVDFKRFQYYLALGASRTLSKVSENFSLTERRIYQISSKNQWQDRVKAINKMLNDQIIGEVFAQVGETARDLANELKPVIFRIINEINERDLASLNPTELKGLLDVCYKMISQIYGLGQPQVTVNHIEQPQIRFKWDWEQDDEPDY
Ga0222718_100152492	F050395	N/A	MSYFYPLKRKNKYKWEYRFLYWNIQKPEINLYIYITDEGFQVAESAAWGNATWDNCKNMKYIGKTKMEVENGTNA
Ga0222718_100152493	F022417	N/A	MAQMPKFLEDYTTVDELINKMNTEYPECRLVSELIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKAKATKLIDSSGGKETDLGSIAYHPPEKSNLDKKVEALEAEGLVTDISHKAQAVMNSIKDFAMDCTAQDLDKARLYTASALTELGIKKEDVSITNLQAVKDKIQDIASSERAS
Ga0222718_100152497	F081225	N/A	MMDGTIGTVANIVGVDMVNANNRRDFKADEHYLYDVKKARPFWSQVCEANNWKVIKDEEDFAEDFVCKISDNLYFMELQVVGYWHNFDKDYISNLWISASKVDNLKKKAQAKNTKAGLIFLNCVPNRFIGIDIDEIKETYKVNKSSGEKSYKIPIQKIDYLYKQLLDSNLCDCLENHIEIMEQGKGRIPMAQKNVNIRGNNGICC
Ga0222718_100152499	F006971	GAG	MIYQNIEYNKHQKVKFVIPTDLRIIDPQTKKILWRYGVIQLFANKTKAAWILEDGAKENIKISLFCILPVH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10015249

Overview

Ecosystem & Geography

Associated Families

Sequences