Scaffold Ga0222718_10013851

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10013851
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5836
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F024204	Metagenome	207	N
F032075	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001385110	F008882	GAGG	MSIKRYNFNKPKINRQELELLNWFLAHTNDNPLINAEALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEL
Ga0222718_1001385113	F032075	AGGAG	MSKLHHTKYKENYKNYILDCIDSEDDLINQELTRNQKIQYLFNRFNSEYGWNIKRVGKYKAMEEWLSGLAINIPYTYFDIIELAQEMGSIDSNPSEALKDRVCENYFSFMAQMVLLLEDELKEVA
Ga0222718_100138515	F004343	GGAG	MTQHKDMIEEARRLLNSERENIPSMSKNFKKDYWLLTYPCGKIVKTYEDKRKNDVVIQESYQ
Ga0222718_100138518	F013295	AGGGGG	MKINNLTPKQFARREIIKYLRDLFDNPKKYIQDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGET
Ga0222718_100138519	F024204	AGGGGG	MKNYSYLEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINKGEL