Scaffold Ga0222718_10012471

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10012471
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6207
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008134	Metagenome / Metatranscriptome	338	Y
F018089	Metagenome	237	Y
F030892	Metagenome	184	N
F031659	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100124712	F031659	GGAGG	MKKKCENPNGLQNMATIVDSQTRKPVKFNSLDKAKEHLKSKGYRFRQAFNMKEDRSMIYQGRFGWVKLSSSKGFLNKTSMEQGTVWNIVKI
Ga0222718_100124714	F030892	AGG	MENLVHSISETRMERLLNPKMSDHFYTNFVGKYGYRGYEIKVGRKWVTMRSNAHKVRMPLAKFKVHAFLQWRRDAMTDASCKEYNITGKYSRPRAWWKDYGFTSNPKDFNYEPSRLAW
Ga0222718_100124715	F018089	AGGA	MTNTTQQTSFETTTPEAKASYGMVRKIASQFSKAKNCPKDIKWGTIHGHFVSRLNDKTKPLTQGQVVKICSMKALPSVDLKAMRSYKKLVELG
Ga0222718_100124719	F008134	AGG	MPQLGSNEKPVLMSSKKNKGRVYGPSWHGGKGAAPRVNIHSKQYADNWDAIFGKGEKNANKEES