Scaffold Ga0222718_10011867

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10011867
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6410
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039881	Metagenome	163	N
F040856	Metagenome	161	Y
F061371	Metagenome	132	Y
F063188	Metagenome	130	N
F085897	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001186710	F040856	AGGA	MNLIELDKAIKEHKIIENIKDGIADGLLHGERDDTKTHYYYKIGYDYGCTMFDMLGTSVCRTEINDGEISE
Ga0222718_1001186711	F063188	AGGA	MEKKKETKTDITLRSDGMWIVDAKLSAVRIGLQDKEFVKRGHNLDYRLWVTCFVAKTQKACIDWLRDNMVMLDKRSQKYSVNVNQYKGSIS
Ga0222718_1001186712	F039881	GGAG	MTRPNKIFQDTTSYNLTIEKKDYEELKKFSTKESNTYNMQVSIADLIRTSVKLYLEDLRIEYGKEKRNQD
Ga0222718_100118672	F061371	GAGG	MRTLTEIDNTIDALKDVSTNALSKHGYSRSRQRLVDLSVNLQQAWENYKVIHGKTYYKELCLFVICRSSSGLRYNTIAKRTGLNKVVVHDCLSLLLADKLIYKKLNDKRLLYCAKKK
Ga0222718_100118678	F085897	AGGA	MAMIEPISLDKHLVDCVSEYKKIRQLQYDCEWNGQTEQASLYRTQSVRLKKLIKDGVLYQPKF