Scaffold Ga0222718_10011706

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10011706
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6469
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021778	Metagenome / Metatranscriptome	217	N
F025038	Metagenome / Metatranscriptome	203	N
F044529	Metagenome / Metatranscriptome	154	N
F054022	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001170614	F021778	GGAGG	MGMPKFLEDYTTVDELISKMNKEYPNCRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAPKKSIEQELEKADIDYVDVSTSQIHVINNVKSFAMDLASENKTNAANWYAQALGELGINDKQLDINNMQTVKNKIQDIATEIQVGGA
Ga0222718_1001170615	F044529	GGA	MLIQEIIYLGFVVYGVISLLMTMAYVSLKLDDKRLREKKKDLYDVTDFESRLKEGEVLNWCNLFTGTHHFDAPADDGNFVCLKCWTYEGYEMEEV
Ga0222718_100117066	F054022	N/A	MIPHFKKGLKVQFVEAATDFIDPPTQEILWRYGKILFQVKSEHGAISYYIEENKKKVKISRYLIFPVN
Ga0222718_100117068	F025038	N/A	MQVNKNNRRLFVEDEYDLYDVRKARPFWHDVCEVNGWDIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSKISNVRISASKVRLLREKDNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLRIINPREVNVLDTNYCDCLENHLAITKRYDGRMAFAQKDYNIRGKNGICC